Detailed information of SNP:
|
SNP ID:
sf0402991915(Gbrowse)
Chromosome: chr04 Position: 2991915 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 78.45% | 21.55% |
| All Indica | 778 | 87.92% | 12.08% |
| All Japonica | 492 | 59.35% | 40.65% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 365 | 83.84% | 16.16% |
| Indica II | 207 | 90.34% | 9.66% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 331 | 43.20% | 56.80% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0402991915 | T->A | INTERGENIC | None |