Detailed information of SNP:
|
SNP ID:
sf0403030609(Gbrowse)
Chromosome: chr04 Position: 3030609 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 82.71% | 17.29% |
| All Indica | 797 | 96.61% | 3.39% |
| All Japonica | 491 | 65.99% | 34.01% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 330 | 52.42% | 47.58% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403030609 | C->A | LOC_Os04g05880(LOC_Os04g05880.1) | INTRON |