Detailed information of SNP:
|
SNP ID:
sf0403049985(Gbrowse)
Chromosome: chr04 Position: 3049985 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 79.03% | 20.97% |
| All Indica | 789 | 94.68% | 5.32% |
| All Japonica | 472 | 57.63% | 42.37% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 370 | 93.51% | 6.49% |
| Indica II | 211 | 95.73% | 4.27% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 316 | 45.25% | 54.75% |
| Tropical Japonica | 91 | 85.71% | 14.29% |
| Japonica Intermediate | 65 | 78.46% | 21.54% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403049985 | C->T | LOC_Os04g05900(LOC_Os04g05900.1) | Synonymous |