Detailed information of SNP:
|
SNP ID:
sf0403051028(Gbrowse)
Chromosome: chr04 Position: 3051028 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 97.65% | 2.35% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 485 | 93.40% | 6.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 99.09% | 0.91% |
| Tropical Japonica | 90 | 72.22% | 27.78% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403051028 | C->T | LOC_Os04g05900(LOC_Os04g05900.1) | Synonymous |