Detailed information of SNP:
|
SNP ID:
sf0403054589(Gbrowse)
Chromosome: chr04 Position: 3054589 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 92.47% | 7.53% |
| All Indica | 740 | 87.16% | 12.84% |
| All Japonica | 491 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 90.93% | 9.07% |
| Indica II | 201 | 84.58% | 15.42% |
| Indica Intermediate | 186 | 82.80% | 17.20% |
| Temperate Japonica | 332 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403054589 | T->C | INTERGENIC | None |