Detailed information of SNP:
|
SNP ID:
sf0403055898(Gbrowse)
Chromosome: chr04 Position: 3055898 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 74.91% | 25.09% |
| All Indica | 793 | 95.96% | 4.04% |
| All Japonica | 475 | 47.79% | 52.21% |
| Aus | 64 | 28.12% | 71.88% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 321 | 36.76% | 63.24% |
| Tropical Japonica | 90 | 74.44% | 25.56% |
| Japonica Intermediate | 64 | 65.62% | 34.38% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403055898 | A->C | INTERGENIC | None |