Detailed information of SNP:
|
SNP ID:
sf0403103975(Gbrowse)
Chromosome: chr04 Position: 3103975 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 61.44% | 38.56% |
| All Indica | 793 | 77.05% | 22.95% |
| All Japonica | 488 | 42.42% | 57.58% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 212 | 67.45% | 32.55% |
| Indica Intermediate | 206 | 55.34% | 44.66% |
| Temperate Japonica | 329 | 32.83% | 67.17% |
| Tropical Japonica | 92 | 71.74% | 28.26% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403103975 | C->T | LOC_Os04g06000(LOC_Os04g06000.1) | Non-Synonymous SNP |