Detailed information of SNP:
|
SNP ID:
sf0403112462(Gbrowse)
Chromosome: chr04 Position: 3112462 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 96.19% | 3.81% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 496 | 91.53% | 8.47% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403112462 | C->T | LOC_Os04g06010(LOC_Os04g06010.1) | Non-Synonymous SNP |