Detailed information of SNP:
|
SNP ID:
sf0403115273(Gbrowse)
Chromosome: chr04 Position: 3115273 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 70.41% | 29.59% |
| All Indica | 761 | 81.73% | 18.27% |
| All Japonica | 482 | 59.96% | 40.04% |
| Aus | 64 | 25.00% | 75.00% |
| Indica I | 372 | 94.89% | 5.11% |
| Indica II | 199 | 75.88% | 24.12% |
| Indica Intermediate | 190 | 62.11% | 37.89% |
| Temperate Japonica | 325 | 52.00% | 48.00% |
| Tropical Japonica | 91 | 89.01% | 10.99% |
| Japonica Intermediate | 66 | 59.09% | 40.91% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403115273 | C->T | INTERGENIC | None |