Detailed information of SNP:
|
SNP ID:
sf0403136557(Gbrowse)
Chromosome: chr04 Position: 3136557 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1358 | 74.08% | 25.92% |
| All Indica | 742 | 79.92% | 20.08% |
| All Japonica | 493 | 60.65% | 39.35% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 340 | 70.88% | 29.12% |
| Indica II | 204 | 91.18% | 8.82% |
| Indica Intermediate | 198 | 83.84% | 16.16% |
| Temperate Japonica | 332 | 48.49% | 51.51% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403136557 | A->G | LOC_Os04g06050(LOC_Os04g06050.1) | Non-Synonymous SNP |