Detailed information of SNP:
|
SNP ID:
sf0403170212(Gbrowse)
Chromosome: chr04 Position: 3170212 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1222 | 85.11% | 14.89% |
| All Indica | 659 | 81.79% | 18.21% |
| All Japonica | 466 | 90.99% | 9.01% |
| Aus | 52 | 76.92% | 23.08% |
| Indica I | 299 | 84.62% | 15.38% |
| Indica II | 187 | 78.61% | 21.39% |
| Indica Intermediate | 173 | 80.35% | 19.65% |
| Temperate Japonica | 324 | 97.53% | 2.47% |
| Tropical Japonica | 82 | 68.29% | 31.71% |
| Japonica Intermediate | 60 | 86.67% | 13.33% |
| Group VI/Aromatic | 9 | 77.78% | 22.22% |
| Intermediate | 36 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403170212 | A->G | LOC_Os04g06110(LOC_Os04g06110.1) | Synonymous |