Detailed information of SNP:
|
SNP ID:
sf0403191898(Gbrowse)
Chromosome: chr04 Position: 3191898 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 92.18% | 7.82% |
| All Indica | 790 | 89.62% | 10.38% |
| All Japonica | 494 | 94.94% | 5.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 94.34% | 5.66% |
| Indica II | 209 | 80.86% | 19.14% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 75.00% | 25.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403191898 | G->A | LOC_Os04g06144(LOC_Os04g06144.1) | Synonymous |