Detailed information of SNP:
SNP ID:
sf0403199708(Gbrowse)
Chromosome: chr04 Position: 3199708 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1394 | 94.55% | 5.45% |
All Indica | 775 | 91.35% | 8.65% |
All Japonica | 496 | 98.39% | 1.61% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 359 | 89.14% | 10.86% |
Indica II | 211 | 96.21% | 3.79% |
Indica Intermediate | 205 | 90.24% | 9.76% |
Temperate Japonica | 335 | 97.91% | 2.09% |
Tropical Japonica | 93 | 98.92% | 1.08% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0403199708 | A->G | LOC_Os04g06144(LOC_Os04g06144.1) | Synonymous |