Detailed information of SNP:



SNP ID: sf0403199708(Gbrowse)

Chromosome: chr04

Position: 3199708
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1394 94.55% 5.45%
All Indica775 91.35% 8.65%
All Japonica496 98.39% 1.61%
Aus67 98.51% 1.49%
Indica I359 89.14% 10.86%
Indica II211 96.21% 3.79%
Indica Intermediate205 90.24% 9.76%
Temperate Japonica335 97.91% 2.09%
Tropical Japonica93 98.92% 1.08%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0403199708 A->G LOC_Os04g06144(LOC_Os04g06144.1) Synonymous