Detailed information of SNP:
|
SNP ID:
sf0403199830(Gbrowse)
Chromosome: chr04 Position: 3199830 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 92.46% | 7.54% |
| All Indica | 735 | 86.53% | 13.47% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 335 | 80.90% | 19.10% |
| Indica II | 202 | 95.05% | 4.95% |
| Indica Intermediate | 198 | 87.37% | 12.63% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403199830 | C->T | LOC_Os04g06144(LOC_Os04g06144.1) | Non-Synonymous SNP |