Detailed information of SNP:
|
SNP ID:
sf0403200636(Gbrowse)
Chromosome: chr04 Position: 3200636 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 95.42% | 4.58% |
| All Indica | 784 | 93.88% | 6.12% |
| All Japonica | 493 | 97.16% | 2.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 204 | 85.78% | 14.22% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403200636 | T->C | LOC_Os04g06144(LOC_Os04g06144.1) | Non-Synonymous SNP |