Detailed information of SNP:
|
SNP ID:
sf0403200920(Gbrowse)
Chromosome: chr04 Position: 3200920 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 79.66% | 20.34% |
| All Indica | 739 | 64.82% | 35.18% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 337 | 43.32% | 56.68% |
| Indica II | 208 | 86.06% | 13.94% |
| Indica Intermediate | 194 | 79.38% | 20.62% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403200920 | T->A | LOC_Os04g06144(LOC_Os04g06144.1) | Synonymous |