Detailed information of SNP:
|
SNP ID:
sf0403201432(Gbrowse)
Chromosome: chr04 Position: 3201432 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 96.92% | 3.08% |
| All Indica | 794 | 97.98% | 2.02% |
| All Japonica | 487 | 96.51% | 3.49% |
| Aus | 61 | 86.89% | 13.11% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 86 | 87.21% | 12.79% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403201432 | T->C | LOC_Os04g06144(LOC_Os04g06144.1) | Non-Synonymous SNP |