Detailed information of SNP:
|
SNP ID:
sf0403201513(Gbrowse)
Chromosome: chr04 Position: 3201513 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 70.86% | 29.14% |
| All Indica | 729 | 48.42% | 51.58% |
| All Japonica | 492 | 98.37% | 1.63% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 341 | 23.75% | 76.25% |
| Indica II | 187 | 75.94% | 24.06% |
| Indica Intermediate | 201 | 64.68% | 35.32% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403201513 | G->T | LOC_Os04g06144(LOC_Os04g06144.1) | Non-Synonymous SNP |