Detailed information of SNP:
|
SNP ID:
sf0403202385(Gbrowse)
Chromosome: chr04 Position: 3202385 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1345 | 82.01% | 17.99% |
| All Indica | 726 | 67.49% | 32.51% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 326 | 50.00% | 50.00% |
| Indica II | 202 | 86.63% | 13.37% |
| Indica Intermediate | 198 | 76.77% | 23.23% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403202385 | A->T | INTERGENIC | None |