Detailed information of SNP:
|
SNP ID:
sf0403202476(Gbrowse)
Chromosome: chr04 Position: 3202476 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 84.49% | 15.51% |
| All Indica | 766 | 72.72% | 27.28% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 60.28% | 39.72% |
| Indica II | 209 | 87.08% | 12.92% |
| Indica Intermediate | 202 | 79.70% | 20.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403202476 | C->T | INTERGENIC | None |