Detailed information of SNP:
|
SNP ID:
sf0403202585(Gbrowse)
Chromosome: chr04 Position: 3202585 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 93.97% | 6.03% |
| All Indica | 786 | 92.49% | 7.51% |
| All Japonica | 488 | 95.70% | 4.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 205 | 84.39% | 15.61% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 79.78% | 20.22% |
| Japonica Intermediate | 65 | 95.38% | 4.62% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403202585 | G->A | INTERGENIC | None |