Detailed information of SNP:
|
SNP ID:
sf0403203424(Gbrowse)
Chromosome: chr04 Position: 3203424 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1317 | 54.06% | 45.94% |
| All Indica | 742 | 82.75% | 17.25% |
| All Japonica | 457 | 14.44% | 85.56% |
| Aus | 65 | 13.85% | 86.15% |
| Indica I | 360 | 93.89% | 6.11% |
| Indica II | 192 | 73.96% | 26.04% |
| Indica Intermediate | 190 | 70.53% | 29.47% |
| Temperate Japonica | 306 | 9.80% | 90.20% |
| Tropical Japonica | 87 | 20.69% | 79.31% |
| Japonica Intermediate | 64 | 28.12% | 71.88% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403203424 | G->A | LOC_Os04g06160(LOC_Os04g06160.1) | Synonymous |