Detailed information of SNP:
|
SNP ID:
sf0403206507(Gbrowse)
Chromosome: chr04 Position: 3206507 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 77.44% | 22.56% |
| All Indica | 793 | 93.95% | 6.05% |
| All Japonica | 486 | 46.91% | 53.09% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 206 | 90.29% | 9.71% |
| Temperate Japonica | 329 | 34.95% | 65.05% |
| Tropical Japonica | 91 | 76.92% | 23.08% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403206507 | A->G | INTERGENIC | None |