Detailed information of SNP:
|
SNP ID:
sf0403210844(Gbrowse)
Chromosome: chr04 Position: 3210844 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 96.18% | 3.82% |
| All Indica | 796 | 99.37% | 0.63% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 208 | 98.56% | 1.44% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403210844 | A->T | INTERGENIC | None |