Detailed information of SNP:
|
SNP ID:
sf0403220578(Gbrowse)
Chromosome: chr04 Position: 3220578 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 70.30% | 29.70% |
| All Indica | 797 | 88.96% | 11.04% |
| All Japonica | 492 | 44.31% | 55.69% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 90.57% | 9.43% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 331 | 24.47% | 75.53% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403220578 | G->A | INTERGENIC | None |