Detailed information of SNP:
|
SNP ID:
sf0403251751(Gbrowse)
Chromosome: chr04 Position: 3251751 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 81.47% | 18.53% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 494 | 50.00% | 50.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 332 | 28.92% | 71.08% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403251751 | T->C | INTERGENIC | None |