Detailed information of SNP:



SNP ID: sf0403251751(Gbrowse)

Chromosome: chr04

Position: 3251751
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1414 81.47% 18.53%
All Indica797 98.75% 1.25%
All Japonica494 50.00% 50.00%
Aus67 100.00% 0.00%
Indica I375 99.47% 0.53%
Indica II213 98.59% 1.41%
Indica Intermediate209 97.61% 2.39%
Temperate Japonica332 28.92% 71.08%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 86.76% 13.24%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0403251751 T->C INTERGENIC None