Detailed information of SNP:
|
SNP ID:
sf0403258083(Gbrowse)
Chromosome: chr04 Position: 3258083 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1327 | 97.14% | 2.86% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 406 | 95.81% | 4.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 251 | 95.22% | 4.78% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403258083 | T->C | INTERGENIC | None |