Detailed information of SNP:
|
SNP ID:
sf0403265271(Gbrowse)
Chromosome: chr04 Position: 3265271 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1367 | 96.63% | 3.37% |
| All Indica | 757 | 94.19% | 5.81% |
| All Japonica | 488 | 99.59% | 0.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 96.64% | 3.36% |
| Indica II | 200 | 90.00% | 10.00% |
| Indica Intermediate | 200 | 94.00% | 6.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 97.73% | 2.27% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403265271 | A->G | LOC_Os04g06280(LOC_Os04g06280.1) | INTRON |