Detailed information of SNP:
|
SNP ID:
sf0403270566(Gbrowse)
Chromosome: chr04 Position: 3270566 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 86.92% | 13.08% |
| All Indica | 781 | 80.15% | 19.85% |
| All Japonica | 495 | 96.77% | 3.23% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 367 | 80.65% | 19.35% |
| Indica II | 207 | 80.19% | 19.81% |
| Indica Intermediate | 207 | 79.23% | 20.77% |
| Temperate Japonica | 333 | 96.10% | 3.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403270566 | C->T | LOC_Os04g06280(LOC_Os04g06280.1) | INTRON |