Detailed information of SNP:
|
SNP ID:
sf0403271204(Gbrowse)
Chromosome: chr04 Position: 3271204 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1273 | 62.06% | 37.94% |
| All Indica | 681 | 44.05% | 55.95% |
| All Japonica | 480 | 91.25% | 8.75% |
| Aus | 63 | 44.44% | 55.56% |
| Indica I | 320 | 49.38% | 50.62% |
| Indica II | 193 | 34.20% | 65.80% |
| Indica Intermediate | 168 | 45.24% | 54.76% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 85 | 60.00% | 40.00% |
| Japonica Intermediate | 63 | 92.06% | 7.94% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 35 | 48.57% | 51.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403271204 | G->C | LOC_Os04g06280(LOC_Os04g06280.1) | INTRON |