Detailed information of SNP:
|
SNP ID:
sf0403271578(Gbrowse)
Chromosome: chr04 Position: 3271578 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 86.67% | 13.33% |
| All Indica | 785 | 80.13% | 19.87% |
| All Japonica | 495 | 96.16% | 3.84% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 367 | 82.56% | 17.44% |
| Indica II | 210 | 80.00% | 20.00% |
| Indica Intermediate | 208 | 75.96% | 24.04% |
| Temperate Japonica | 334 | 94.91% | 5.09% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403271578 | A->G | LOC_Os04g06280(LOC_Os04g06280.1) | INTRON |