Detailed information of SNP:
|
SNP ID:
sf0403285886(Gbrowse)
Chromosome: chr04 Position: 3285886 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1330 | 89.62% | 10.38% |
| All Indica | 717 | 82.85% | 17.15% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 61 | 86.89% | 13.11% |
| Indica I | 346 | 83.53% | 16.47% |
| Indica II | 187 | 80.75% | 19.25% |
| Indica Intermediate | 184 | 83.70% | 16.30% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403285886 | C->T | LOC_Os04g06290(LOC_Os04g06290.1) | Synonymous |