Detailed information of SNP:
|
SNP ID:
sf0403287604(Gbrowse)
Chromosome: chr04 Position: 3287604 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 97.13% | 2.87% |
| All Indica | 779 | 95.12% | 4.88% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 370 | 95.41% | 4.59% |
| Indica II | 206 | 94.66% | 5.34% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403287604 | A->G | LOC_Os04g06290(LOC_Os04g06290.1) | Non-Synonymous SNP |