Detailed information of SNP:
|
SNP ID:
sf0403293609(Gbrowse)
Chromosome: chr04 Position: 3293609 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 74.68% | 25.32% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 47.28% | 52.72% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 50.15% | 49.85% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 58.82% | 41.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403293609 | C->T | LOC_Os04g06300(LOC_Os04g06300.1) | Synonymous |