Detailed information of SNP:
|
SNP ID:
sf0403310372(Gbrowse)
Chromosome: chr04 Position: 3310372 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 88.68% | 11.32% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 494 | 81.17% | 18.83% |
| Aus | 65 | 41.54% | 58.46% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 92 | 40.22% | 59.78% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403310372 | T->C | LOC_Os04g06360(LOC_Os04g06360.1) | INTRON |