Detailed information of SNP:
|
SNP ID:
sf0403311422(Gbrowse)
Chromosome: chr04 Position: 3311422 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 98.92% | 1.08% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 471 | 97.03% | 2.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 78 | 88.46% | 11.54% |
| Japonica Intermediate | 62 | 95.16% | 4.84% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403311422 | A->T | LOC_Os04g06360(LOC_Os04g06360.1) | Non-Synonymous SNP |