Detailed information of SNP:
|
SNP ID:
sf0403316350(Gbrowse)
Chromosome: chr04 Position: 3316350 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 93.89% | 6.11% |
| All Indica | 789 | 92.65% | 7.35% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 368 | 90.49% | 9.51% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403316350 | G->T | LOC_Os04g06360(LOC_Os04g06360.1) | Non-Synonymous SNP |