Detailed information of SNP:
|
SNP ID:
sf0403317855(Gbrowse)
Chromosome: chr04 Position: 3317855 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 89.87% | 10.13% |
| All Indica | 755 | 87.42% | 12.58% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 349 | 84.81% | 15.19% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 199 | 82.41% | 17.59% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403317855 | C->T | LOC_Os04g06360(LOC_Os04g06360.1) | Synonymous |