Detailed information of SNP:
|
SNP ID:
sf0403318844(Gbrowse)
Chromosome: chr04 Position: 3318844 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1327 | 63.00% | 37.00% |
| All Indica | 743 | 76.58% | 23.42% |
| All Japonica | 466 | 36.05% | 63.95% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 337 | 70.03% | 29.97% |
| Indica II | 206 | 83.01% | 16.99% |
| Indica Intermediate | 200 | 81.00% | 19.00% |
| Temperate Japonica | 325 | 19.38% | 80.62% |
| Tropical Japonica | 83 | 77.11% | 22.89% |
| Japonica Intermediate | 58 | 70.69% | 29.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 81.08% | 18.92% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403318844 | A->G | LOC_Os04g06360(LOC_Os04g06360.1) | Non-Synonymous SNP |