Detailed information of SNP:
|
SNP ID:
sf0403324273(Gbrowse)
Chromosome: chr04 Position: 3324273 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 97.64% | 2.36% |
| All Indica | 782 | 96.80% | 3.20% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 204 | 90.69% | 9.31% |
| Indica Intermediate | 206 | 97.57% | 2.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403324273 | C->T | INTERGENIC | None |