Detailed information of SNP:
|
SNP ID:
sf0403325962(Gbrowse)
Chromosome: chr04 Position: 3325962 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 92.08% | 7.92% |
| All Indica | 786 | 96.06% | 3.94% |
| All Japonica | 495 | 84.24% | 15.76% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 96.49% | 3.51% |
| Indica II | 206 | 97.57% | 2.43% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 333 | 78.38% | 21.62% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403325962 | G->A | INTERGENIC | None |