Detailed information of SNP:
|
SNP ID:
sf0403325969(Gbrowse)
Chromosome: chr04 Position: 3325969 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 97.03% | 2.97% |
| All Indica | 771 | 95.46% | 4.54% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 361 | 96.12% | 3.88% |
| Indica II | 205 | 97.07% | 2.93% |
| Indica Intermediate | 205 | 92.68% | 7.32% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403325969 | G->A | INTERGENIC | None |