Detailed information of SNP:
|
SNP ID:
sf0403401734(Gbrowse)
Chromosome: chr04 Position: 3401734 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 95.48% | 4.52% |
| All Indica | 730 | 91.64% | 8.36% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 324 | 88.27% | 11.73% |
| Indica II | 204 | 95.10% | 4.90% |
| Indica Intermediate | 202 | 93.56% | 6.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403401734 | A->T | INTERGENIC | None |