Detailed information of SNP:
|
SNP ID:
sf0403417580(Gbrowse)
Chromosome: chr04 Position: 3417580 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 81.41% | 18.59% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 489 | 63.19% | 36.81% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 333 | 58.86% | 41.14% |
| Tropical Japonica | 88 | 72.73% | 27.27% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403417580 | G->A | INTERGENIC | None |