Detailed information of SNP:
|
SNP ID:
sf0403433475(Gbrowse)
Chromosome: chr04 Position: 3433475 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 67.27% | 32.73% |
| All Indica | 776 | 91.62% | 8.38% |
| All Japonica | 480 | 31.67% | 68.33% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 360 | 87.78% | 12.22% |
| Indica II | 209 | 96.17% | 3.83% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 327 | 15.60% | 84.40% |
| Tropical Japonica | 92 | 67.39% | 32.61% |
| Japonica Intermediate | 61 | 63.93% | 36.07% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403433475 | T->C | LOC_Os04g06540(LOC_Os04g06540.1) | Non-Synonymous SNP |