Detailed information of SNP:
|
SNP ID:
sf0403448315(Gbrowse)
Chromosome: chr04 Position: 3448315 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 88.21% | 11.79% |
| All Indica | 784 | 81.63% | 18.37% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 371 | 98.92% | 1.08% |
| Indica II | 208 | 47.60% | 52.40% |
| Indica Intermediate | 205 | 84.88% | 15.12% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403448315 | C->T | LOC_Os04g06560(LOC_Os04g06560.1) | Non-Synonymous SNP |