Detailed information of SNP:
|
SNP ID:
sf0403448351(Gbrowse)
Chromosome: chr04 Position: 3448351 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 88.13% | 11.87% |
| All Indica | 782 | 81.20% | 18.80% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 206 | 45.15% | 54.85% |
| Indica Intermediate | 204 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403448351 | A->T | LOC_Os04g06560(LOC_Os04g06560.1) | Non-Synonymous SNP |