Detailed information of SNP:
|
SNP ID:
sf0403474123(Gbrowse)
Chromosome: chr04 Position: 3474123 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 97.43% | 2.57% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 483 | 92.96% | 7.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 87 | 72.41% | 27.59% |
| Japonica Intermediate | 63 | 87.30% | 12.70% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403474123 | C->T | LOC_Os04g06600(LOC_Os04g06600.1) | INTRON |