Detailed information of SNP:
|
SNP ID:
sf0403510884(Gbrowse)
Chromosome: chr04 Position: 3510884 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1304 | 91.56% | 8.44% |
| All Indica | 726 | 95.04% | 4.96% |
| All Japonica | 471 | 94.90% | 5.10% |
| Aus | 55 | 36.36% | 63.64% |
| Indica I | 344 | 95.93% | 4.07% |
| Indica II | 185 | 95.14% | 4.86% |
| Indica Intermediate | 197 | 93.40% | 6.60% |
| Temperate Japonica | 315 | 94.60% | 5.40% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403510884 | C->T | INTERGENIC | None |