Detailed information of SNP:
|
SNP ID:
sf0403548118(Gbrowse)
Chromosome: chr04 Position: 3548118 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 78.01% | 21.99% |
| All Indica | 794 | 64.74% | 35.26% |
| All Japonica | 495 | 95.76% | 4.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 49.73% | 50.27% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 209 | 72.73% | 27.27% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0403548118 | T->C | INTERGENIC | None |